2025, A. Balwani*, A.Q. Wang, F. Najafi, H. Choi*, “Constructing biologically constrained RNNs via Dale’s backprop and topologically-informed pruning“, bioRxiv preprint: doi.org/10.1101/2025.01.09.632231

2025, J. Del Rosario, S. Coletta+, S.H. Kim+, Z. Mobille, K. Peelman, B. Williams, A. J. Otsuki, A. Del Castillo Valerio, K. Worden, L. T. Blanpain, L. Lovell, H. Choi, B. Haider*, “Lateral inhibition in V1 controls neural and perceptual contrast sensitivity“, accepted, Nature Neuroscience

2024, Z. Mobille*, U.B. Sikandar, S. Sponberg, H. Choi*, “Temporal resolution of spike coding in feedforward networks with signal convergence and divergence”, bioRxiv preprint: doi.org/10.1101/2024.07.08.602598

2024, D. Tang*, J. Zylberberg*+, X. Jia*+, H. Choi*+, “Stimulus type shapes the topology of cellular functional networks in mouse visual cortex”, Nature Communications 15: 5753

2024, A. Balwani*, S. Cho, H. Choi*, “Exploring the architectural biases of the canonical cortical microcircuit”, bioRxiv preprint: doi.org/10.1101/2024.05.23.595629

2024, S. Yao*, H. Choi, E.M. Li, N. A. Lusk, M. J. Taormina, …, B. Tasic, Q. Wang, S. Mihalas, H. Zeng*, “The input-output connectional organization of the cortical-thalamic-basal ganglia circuits and its molecular underpinnings”, under review

2024, A. Sharafeldin*, N. Imam*, H. Choi*, “Active sensing with predictive coding and uncertainty minimization”, Patterns 5: 100983

2024, C. Li, S.H. Kim, C. Rodgers, H. Choi, A. Wu*, “One-hot generalized linear model for switching brain state discovery”, The 12th International Conference on Learning Representations (ICLR): 1-22

2024, F. Shirani*, H. Choi, “On the physiological and structural contributors to the overall balance of excitation and inhibition in local cortical networks”, Journal of Computational Neuroscience 52(1):73–107

2023, D.G. Wyrick, N. Cain, R.S. Larsen, J. Lecoq, M. Valley, R. Ahmed, J. Bowlus, G. Boyer, S. Caldejon, L. Casal, M. Chvilicek, M. DePartee, P.A.Groblewski, C. Huang, K. Johnson, I. Kato, J. Larkin, E. Lee, E, Liang, J. Luviano, K. Mace, C. Nayan, T. Nguyen, M. Reding, S. Seid, J. Sevigny, M. Stoecklin, A. Williford, H. Choi*+, M. Garrett*+, L. Mazzucato*+, “Differential encoding of temporal context and expectation under representational drift across hierarchically connected areas”, bioRxiv preprint: doi.org/10.1101/2023.06.02.543483

2023, A. Sharafeldin*, N. Imam+, H. Choi+, “Active vision with predictive coding and uncertainty minimization”, Information-Theoretic Principles in Cognitive Systems (InfoCog) Workshop, The 37th Conference on Neural Information Processing Systems (NeurIPS): 1-23

2023, U.B. Sikandar*, H. Choi, J. Putney, H. Yang, S. Ferrari, S. Sponberg, “Predicting visually modulated precisely-timed spikes across a coordinated and comprehensive motor program”, International Joint Conference on Neural Networks (IJCNN) :1–8

2021, J.H. Siegle*+, X. Jia*+, S. Durand, S. Gale, C. Bennett, N. Graddis, G. Heller, T. Ramirez, H. Choi, J.A. Luviano, …, S.R. Olsen*++, C. Koch++, “Survey of spiking in the mouse visual system reveals functional hierarchy”, Nature 592:86–92

2019, J.A. Harris*+, S. Mihalas+, K.E. Hirokawa, J.D. Whitesell, H. Choi, …, C. Koch, H. Zeng, “Hierarchical organization of cortical and thalamic connectivity”, Nature 575:195-202

2019, H. Choi*, S. Mihalas, “Synchronization dependent on spatial structures of a mesoscopic whole-brain network”, PLOS Computational Biology 15(4): e1006978

2018, H. Choi*, A.Pasupathy, E. Shea-Brown, “Predictive coding in area V4: dynamical shape discrimination under partial occlusion”, Neural Computation 30(5):1209–1257  [Featured cover article]

2017, A.M. Fyall+, Y. El-Shamayleh+, H. Choi, E. Shea-Brown, A. Pasupathy*, “Dynamic representation of partially occluded objects in primate prefrontal and visual cortex”, eLife 6:e25784

2014, H. Choi, L. Zhang, M.S. Cembrowski, C.F. Sabottke, A.L. Markowitz, D.A. Butts, W.L. Kath, J.H. Singer*, and H. Riecke*, “Intrinsic bursting of AII amacrine cells underlies oscillations in rd1 mouse retina”, Journal of Neurophysiology 112: 1491-1504

2010, W-S. Jung, K.S. Lee, J.S. Park, H. Choi, M.Y. Choi*, “Sleepless in Seoul: The Ant and the Metrohopper”, Journal of the Korean Physical Society 57(4):823

2010, M.Y. Choi*, H. Choi, J.-Y. Fortin, J. Choi, “Reply to the comment by A. Gadomski”, Europhysics Letter 89: 40003

2009, M.Y. Choi*, H. Choi, J.-Y. Fortin, J. Choi, “How skew distributions emerge in evolving systems”, Europhysics Letter 85: 30006

+, ++ indicate equal contribution. * indicate corresponding authors.